HL_7LS2_117

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

7LS2|1|n2|G|18, 7LS2|1|n2|G|19, 7LS2|1|n2|A|20, 7LS2|1|n2|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_117 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.5616

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|n2|C|14
7LS2|1|n2|A|15
7LS2|1|n2|G|16
7LS2|1|n2|C|17
7LS2|1|n2|G|18
7LS2|1|n2|G|19
7LS2|1|n2|A|20
7LS2|1|n2|A|21
7LS2|1|n2|G|22

Current chains

Chain n2

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L1

60S ribosomal protein L10a