HL_7LS2_124

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

7LS2|1|A2|G|4127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_124 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3642

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

7LS2|1|A2|A|4125
7LS2|1|A2|A|4126
7LS2|1|A2|G|4127
7LS2|1|A2|C|4128
7LS2|1|A2|A|4129
7LS2|1|A2|G|4130
7LS2|1|A2|A|4131
7LS2|1|A2|A|4132
7LS2|1|A2|U|4133
7LS2|1|A2|U|4134

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain m

Elongation factor 2