HL_7LS2_127

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7LS2|1|A2|A|3866, 7LS2|1|A2|C|3873

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_127 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.128

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7LS2|1|A2|U|3862
7LS2|1|A2|C|3863
7LS2|1|A2|A|3864
7LS2|1|A2|A|3865
7LS2|1|A2|A|3866
7LS2|1|A2|C|3867
7LS2|1|A2|G|3868
7LS2|1|A2|G|3869
7LS2|1|A2|U|3870
7LS2|1|A2|A|3871
7LS2|1|A2|6MZ|3872
7LS2|1|A2|C|3873
7LS2|1|A2|G|3874

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29