HL_7M4Y_012

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCACGUGAAAC

Length

11 nucleotides

Bulged bases

7M4Y|1|A|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Y_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1314

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7M4Y|1|A|G|381
7M4Y|1|A|C|382
7M4Y|1|A|A|383
7M4Y|1|A|C|384
7M4Y|1|A|G|385
7M4Y|1|A|U|386
7M4Y|1|A|G|387
7M4Y|1|A|A|388
7M4Y|1|A|A|389
7M4Y|1|A|A|390
7M4Y|1|A|C|391

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L28

Chain v

Transfer RNA; tRNA