HL_7M4Z_034

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGUUGGUUG

Length

9 nucleotides

Bulged bases

7M4Z|1|A|U|1448, 7M4Z|1|A|U|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_034 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1063

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7M4Z|1|A|C|1446
7M4Z|1|A|G|1447
7M4Z|1|A|U|1448
7M4Z|1|A|U|1449
7M4Z|1|A|G|1450
7M4Z|1|A|G|1451
7M4Z|1|A|U|1452
7M4Z|1|A|U|1453
7M4Z|1|A|G|1454

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17