HL_7M4Z_046

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

7M4Z|1|A|A|1909, 7M4Z|1|A|C|1910, 7M4Z|1|A|A|1912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_046 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2729

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7M4Z|1|A|G|1906
7M4Z|1|A|PSU|1907
7M4Z|1|A|A|1908
7M4Z|1|A|A|1909
7M4Z|1|A|C|1910
7M4Z|1|A|3TD|1911
7M4Z|1|A|A|1912
7M4Z|1|A|PSU|1913
7M4Z|1|A|A|1914
7M4Z|1|A|A|1915
7M4Z|1|A|C|1916

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA