HL_7M4Z_047

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7M4Z|1|A|U|1951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.119

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7M4Z|1|A|G|1945
7M4Z|1|A|G|1946
7M4Z|1|A|U|1947
7M4Z|1|A|A|1948
7M4Z|1|A|A|1949
7M4Z|1|A|G|1950
7M4Z|1|A|U|1951
7M4Z|1|A|U|1952
7M4Z|1|A|C|1953

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA