HL_7M4Z_059

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGAAGCAG

Length

8 nucleotides

Bulged bases

7M4Z|1|A|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1071

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7M4Z|1|A|U|2524
7M4Z|1|A|G|2525
7M4Z|1|A|A|2526
7M4Z|1|A|A|2527
7M4Z|1|A|G|2528
7M4Z|1|A|C|2529
7M4Z|1|A|A|2530
7M4Z|1|A|G|2531

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6