HL_7MDZ_022

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7MDZ|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_022 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2672

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7MDZ|1|5|G|1479
7MDZ|1|5|C|1480
7MDZ|1|5|C|1481
7MDZ|1|5|G|1482
7MDZ|1|5|C|1483
7MDZ|1|5|G|1484
7MDZ|1|5|C|1485
7MDZ|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain i

60S ribosomal protein L36