HL_7MDZ_024

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

7MDZ|1|5|U|1596, 7MDZ|1|5|A|1600, 7MDZ|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.09

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7MDZ|1|5|A|1593
7MDZ|1|5|C|1594
7MDZ|1|5|G|1595
7MDZ|1|5|U|1596
7MDZ|1|5|G|1597
7MDZ|1|5|C|1598
7MDZ|1|5|G|1599
7MDZ|1|5|A|1600
7MDZ|1|5|A|1601
7MDZ|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

Ribosomal protein L37