HL_7MDZ_028

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7MDZ|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_028 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3621

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7MDZ|1|5|C|1816
7MDZ|1|5|U|1817
7MDZ|1|5|G|1818
7MDZ|1|5|G|1819
7MDZ|1|5|U|1820
7MDZ|1|5|G|1821
7MDZ|1|5|U|1822
7MDZ|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

60S ribosomal protein L29