HL_7MDZ_050
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 7MDZ|1|5|A|3642, 7MDZ|1|5|A|3643, 7MDZ|1|5|U|3644, 7MDZ|1|5|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MDZ_050 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.212
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
7MDZ|1|5|U|3639
7MDZ|1|5|U|3640
7MDZ|1|5|U|3641
7MDZ|1|5|A|3642
7MDZ|1|5|A|3643
7MDZ|1|5|U|3644
7MDZ|1|5|U|3645
7MDZ|1|5|A|3646
7MDZ|1|5|A|3647
7MDZ|1|5|A|3648
7MDZ|1|5|A|3649
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain j
- Ribosomal protein L37
Coloring options: