HL_7MDZ_106

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7MDZ|1|9|U|1300, 7MDZ|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_106 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3443

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7MDZ|1|9|A|1295
7MDZ|1|9|U|1296
7MDZ|1|9|U|1297
7MDZ|1|9|G|1298
7MDZ|1|9|A|1299
7MDZ|1|9|U|1300
7MDZ|1|9|A|1301
7MDZ|1|9|G|1302
7MDZ|1|9|C|1303
7MDZ|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain dd

eS29

Chain ff

eS31