HL_7MPI_034

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

7MPI|1|A1|U|1567, 7MPI|1|A1|U|1568, 7MPI|1|A1|U|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_034 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1685

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7MPI|1|A1|A|1566
7MPI|1|A1|U|1567
7MPI|1|A1|U|1568
7MPI|1|A1|U|1569
7MPI|1|A1|U|1570
7MPI|1|A1|A|1571
7MPI|1|A1|U|1572

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA