HL_7MPI_039

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7MPI|1|A1|C|1762, 7MPI|1|A1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_039 not in the Motif Atlas

Homologous match to HL_8C3A_039

Geometric discrepancy: 0.5263

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7MPI|1|A1|C|1759
7MPI|1|A1|A|1760
7MPI|1|A1|C|1761
7MPI|1|A1|C|1762
7MPI|1|A1|U|1763
7MPI|1|A1|U|1764
7MPI|1|A1|U|1765
7MPI|1|A1|G|1766

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A