HL_7MPI_052

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAGACAUAGUUUCU

Length

15 nucleotides

Bulged bases

7MPI|1|A1|A|2441, 7MPI|1|A1|A|2443, 7MPI|1|A1|U|2501, 7MPI|1|A1|U|2504, 7MPI|1|A1|C|2507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_052 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2019

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7MPI|1|A1|A|2439
7MPI|1|A1|G|2440
7MPI|1|A1|A|2441
7MPI|1|A1|G|2442
7MPI|1|A1|A|2443
7MPI|1|A1|C|2444
7MPI|1|A1|A|2445
7MPI|1|A1|U|2501
7MPI|1|A1|A|2502
7MPI|1|A1|G|2503
7MPI|1|A1|U|2504
7MPI|1|A1|U|2505
7MPI|1|A1|U|2506
7MPI|1|A1|C|2507
7MPI|1|A1|U|2508

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain BB

40S ribosomal protein S1-A