HL_7MPI_086

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_086 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1124

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7MPI|1|B5|U|368
7MPI|1|B5|A|369
7MPI|1|B5|A|370
7MPI|1|B5|G|371
7MPI|1|B5|G|372
7MPI|1|B5|G|373

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

40S ribosomal protein S2

Chain BJ

40S ribosomal protein S9-A

Chain BL

40S ribosomal protein S11-A

Chain BW

40S ribosomal protein S22-A

Chain BX

40S ribosomal protein S23-A