HL_7MPI_089

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7MPI|1|B5|A|452, 7MPI|1|B5|U|454, 7MPI|1|B5|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_089 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.1824

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|U|450
7MPI|1|B5|A|451
7MPI|1|B5|A|452
7MPI|1|B5|U|453
7MPI|1|B5|U|454
7MPI|1|B5|C|455
7MPI|1|B5|A|456

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A