HL_7MPI_093

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUGUGG

Length

7 nucleotides

Bulged bases

7MPI|1|B5|U|718, 7MPI|1|B5|U|719, 7MPI|1|B5|G|720, 7MPI|1|B5|U|721, 7MPI|1|B5|G|722

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_093 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3267

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|C|717
7MPI|1|B5|U|718
7MPI|1|B5|U|719
7MPI|1|B5|G|720
7MPI|1|B5|U|721
7MPI|1|B5|G|722
7MPI|1|B5|G|723

Current chains

Chain B5

18S rRNA

Nearby chains