HL_7MPI_112

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

7MPI|1|B5|A|1693, 7MPI|1|B5|U|1708, 7MPI|1|B5|C|1709, 7MPI|1|B5|G|1698, 7MPI|1|B5|G|1699, 7MPI|1|B5|C|1700, 7MPI|1|B5|A|1701, 7MPI|1|B5|A|1702, 7MPI|1|B5|C|1703, 7MPI|1|B5|U|1704, 7MPI|1|B5|C|1705, 7MPI|1|B5|C|1706, 7MPI|1|B5|A|1707, 7MPI|1|B5|U|1708, 7MPI|1|B5|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_112 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2403

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7MPI|1|B5|G|1690
7MPI|1|B5|A|1691
7MPI|1|B5|G|1692
7MPI|1|B5|A|1693
7MPI|1|B5|U|1708
7MPI|1|B5|C|1709
7MPI|1|B5|U|1710
7MPI|1|B5|C|1711
7MPI|1|B5|G|1698
7MPI|1|B5|G|1699
7MPI|1|B5|C|1700
7MPI|1|B5|A|1701
7MPI|1|B5|A|1702
7MPI|1|B5|C|1703
7MPI|1|B5|U|1704
7MPI|1|B5|C|1705
7MPI|1|B5|C|1706
7MPI|1|B5|A|1707
7MPI|1|B5|U|1708
7MPI|1|B5|C|1709
7MPI|1|B5|U|1710
*
7MPI|1|B5|C|1711

Current chains

Chain B5

18S rRNA

Nearby chains