HL_7MPI_120

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

7MPI|1|B5|A|416

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_120 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1178

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

7MPI|1|B5|OMC|414
7MPI|1|B5|C|415
7MPI|1|B5|A|416
7MPI|1|B5|A|417
7MPI|1|B5|G|418
7MPI|1|B5|G|419

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain AW

60S ribosomal protein L24-A

Chain BG

40S ribosomal protein S6-A