3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
7MPJ|1|A1|U|1081
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MPJ_024 not in the Motif Atlas
Geometric match to HL_5TBW_024
Geometric discrepancy: 0.1195
The information below is about HL_5TBW_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

7MPJ|1|A1|C|1076
7MPJ|1|A1|U|1077
7MPJ|1|A1|U|1078
7MPJ|1|A1|A|1079
7MPJ|1|A1|A|1080
7MPJ|1|A1|U|1081
7MPJ|1|A1|U|1082
7MPJ|1|A1|G|1083

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AD
60S ribosomal protein L5
Chain AT
60S ribosomal protein L21-A
Chain Ab
60S ribosomal protein L29

Coloring options:


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