HL_7MPJ_050

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7MPJ|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0889

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7MPJ|1|A1|U|2292
7MPJ|1|A1|C|2293
7MPJ|1|A1|U|2294
7MPJ|1|A1|A|2295
7MPJ|1|A1|A|2296
7MPJ|1|A1|U|2297
7MPJ|1|A1|U|2298
7MPJ|1|A1|A|2299
7MPJ|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA