HL_7MPJ_056
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- U(UR3)AAACG(A2M)UAACG
- Length
- 13 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|2637, 7MPJ|1|A1|C|2644
- QA status
- Modified nucleotides: UR3, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_056 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.0967
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
7MPJ|1|A1|U|2633
7MPJ|1|A1|UR3|2634
7MPJ|1|A1|A|2635
7MPJ|1|A1|A|2636
7MPJ|1|A1|A|2637
7MPJ|1|A1|C|2638
7MPJ|1|A1|G|2639
7MPJ|1|A1|A2M|2640
7MPJ|1|A1|U|2641
7MPJ|1|A1|A|2642
7MPJ|1|A1|A|2643
7MPJ|1|A1|C|2644
7MPJ|1|A1|G|2645
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AI
- 60S ribosomal protein L10
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- 60S ribosomal protein L29
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