3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MPJ_062 not in the Motif Atlas
Homologous match to HL_8C3A_062
Geometric discrepancy: 0.2177
The information below is about HL_8C3A_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82661.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7MPJ|1|A1|C|2840
7MPJ|1|A1|G|2841
7MPJ|1|A1|U|2842
7MPJ|1|A1|U|2843
7MPJ|1|A1|C|2844
7MPJ|1|A1|A|2845
7MPJ|1|A1|U|2846
7MPJ|1|A1|A|2847
7MPJ|1|A1|G|2848

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AI
60S ribosomal protein L10
Chain Am
60S ribosomal protein L40-A

Coloring options:


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