HL_7MPJ_063

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7MPJ|1|A1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_063 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1281

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7MPJ|1|A1|A|2897
7MPJ|1|A1|G|2898
7MPJ|1|A1|C|2899
7MPJ|1|A1|A|2900
7MPJ|1|A1|G|2901
7MPJ|1|A1|A|2902
7MPJ|1|A1|A|2903
7MPJ|1|A1|U|2904

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain Am

60S ribosomal protein L40-A