HL_7MPJ_085

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7MPJ|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_085 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.0734

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7MPJ|1|B5|G|330
7MPJ|1|B5|A|331
7MPJ|1|B5|U|332
7MPJ|1|B5|A|333
7MPJ|1|B5|G|334
7MPJ|1|B5|U|335
7MPJ|1|B5|G|336
7MPJ|1|B5|G|337
7MPJ|1|B5|C|338

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A