HL_7MPJ_104
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 7MPJ|1|B5|G|1243, 7MPJ|1|B5|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_104 not in the Motif Atlas
- Geometric match to HL_4V88_213
- Geometric discrepancy: 0.1734
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7MPJ|1|B5|A|1238
7MPJ|1|B5|U|1239
7MPJ|1|B5|U|1240
7MPJ|1|B5|G|1241
7MPJ|1|B5|A|1242
7MPJ|1|B5|G|1243
7MPJ|1|B5|A|1244
7MPJ|1|B5|G|1245
7MPJ|1|B5|C|1246
7MPJ|1|B5|U|1247
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- 40S ribosomal protein S15
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bf
- 40S ribosomal protein S31
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