HL_7MPJ_106

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7MPJ|1|B5|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_106 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.0749

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7MPJ|1|B5|C|1309
7MPJ|1|B5|U|1310
7MPJ|1|B5|U|1311
7MPJ|1|B5|A|1312
7MPJ|1|B5|A|1313
7MPJ|1|B5|U|1314
7MPJ|1|B5|U|1315
7MPJ|1|B5|G|1316

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A