HL_7MPJ_116

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

7MPJ|1|A1|U|879, 7MPJ|1|A1|A|883, 7MPJ|1|A1|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_116 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0828

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7MPJ|1|A1|A2M|876
7MPJ|1|A1|C|877
7MPJ|1|A1|G|878
7MPJ|1|A1|U|879
7MPJ|1|A1|G|880
7MPJ|1|A1|C|881
7MPJ|1|A1|A|882
7MPJ|1|A1|A|883
7MPJ|1|A1|A|884
7MPJ|1|A1|U|885

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A