HL_7MPJ_122

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA(PSU)CAGAUAC(OMC)

Length

11 nucleotides

Bulged bases

7MPJ|1|B5|U|1004

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_122 not in the Motif Atlas

Homologous match to HL_8P9A_211

Geometric discrepancy: 0.302

The information below is about HL_8P9A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7MPJ|1|B5|G|997
7MPJ|1|B5|A|998
7MPJ|1|B5|PSU|999
7MPJ|1|B5|C|1000
7MPJ|1|B5|A|1001
7MPJ|1|B5|G|1002
7MPJ|1|B5|A|1003
7MPJ|1|B5|U|1004
7MPJ|1|B5|A|1005
7MPJ|1|B5|C|1006
7MPJ|1|B5|OMC|1007

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S ribosomal protein S14-A

Chain Ba

40S ribosomal protein S26-A