HL_7MQ8_020
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUUCCCAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MQ8_020 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1916
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
7MQ8|1|L1|U|1112
7MQ8|1|L1|A|1113
7MQ8|1|L1|U|1114
7MQ8|1|L1|U|1115
7MQ8|1|L1|C|1116
7MQ8|1|L1|C|1117
7MQ8|1|L1|C|1118
7MQ8|1|L1|A|1119
7MQ8|1|L1|U|1120
7MQ8|1|L1|G|1121
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NH
- Nucleolar protein 6
- Chain NI
- Ribosomal RNA-processing protein 7 homolog A
- Chain NM
- 40S ribosomal protein S3a
- Chain NQ
- 40S ribosomal protein S27
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