HL_7MQ8_031

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7MQ8|1|L1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_031 not in the Motif Atlas

Homologous match to HL_8P9A_192

Geometric discrepancy: 0.4989

The information below is about HL_8P9A_192

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7MQ8|1|L1|G|156
7MQ8|1|L1|U|157
7MQ8|1|L1|A|158
7MQ8|1|L1|A|159
7MQ8|1|L1|U|160
7MQ8|1|L1|U|161
7MQ8|1|L1|C|162

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain NJ

RNA cytidine acetyltransferase