HL_7MQ9_013

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7MQ9|1|L1|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ9_013 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4216

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7MQ9|1|L1|C|498
7MQ9|1|L1|G|499
7MQ9|1|L1|A|500
7MQ9|1|L1|C|501
7MQ9|1|L1|C|502
7MQ9|1|L1|C|503
7MQ9|1|L1|G|504

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4 X isoform

Chain LF

40S ribosomal protein S24

Chain SP

Small subunit processome component 20 homolog