HL_7MQ9_018

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ9_018 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2014

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7MQ9|1|L1|A|957
7MQ9|1|L1|G|958
7MQ9|1|L1|G|959
7MQ9|1|L1|U|960
7MQ9|1|L1|G|961
7MQ9|1|L1|A|962
7MQ9|1|L1|A|963
7MQ9|1|L1|A|964
7MQ9|1|L1|U|965
7MQ9|1|L1|U|966

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NG

40S ribosomal protein S14

Chain NM

40S ribosomal protein S3a

Chain NY

KRR1 small subunit processome component homolog