HL_7MQA_004
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUGACUC
- Length
- 8 nucleotides
- Bulged bases
- 7MQA|1|L1|U|294
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MQA_004 not in the Motif Atlas
- Geometric match to HL_4V88_191
- Geometric discrepancy: 0.2235
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7MQA|1|L1|G|288
7MQA|1|L1|G|289
7MQA|1|L1|U|290
7MQA|1|L1|G|291
7MQA|1|L1|A|292
7MQA|1|L1|C|293
7MQA|1|L1|U|294
7MQA|1|L1|C|295
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4, X isoform
- Chain L6
- 40S ribosomal protein S6
- Chain LD
- 40S ribosomal protein S11
- Chain SP
- Small subunit processome component 20 homolog
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