HL_7MSM_012

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7MSM|1|A|G|412, 7MSM|1|A|A|413, 7MSM|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSM_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1385

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7MSM|1|A|G|410
7MSM|1|A|U|411
7MSM|1|A|G|412
7MSM|1|A|A|413
7MSM|1|A|G|414
7MSM|1|A|A|415
7MSM|1|A|G|416
7MSM|1|A|C|417
7MSM|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24