HL_7MSM_035

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

7MSM|1|A|C|1456, 7MSM|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSM_035 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1515

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7MSM|1|A|G|1455
7MSM|1|A|C|1456
7MSM|1|A|C|1457
7MSM|1|A|A|1458
7MSM|1|A|G|1459
7MSM|1|A|U|1460
7MSM|1|A|C|1461

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22