HL_7N2C_008

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2C_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0991

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7N2C|1|16|A|320
7N2C|1|16|A|321
7N2C|1|16|C|322
7N2C|1|16|U|323
7N2C|1|16|G|324
7N2C|1|16|A|325
7N2C|1|16|G|326
7N2C|1|16|A|327
7N2C|1|16|C|328
7N2C|1|16|A|329
7N2C|1|16|C|330
7N2C|1|16|G|331
7N2C|1|16|G|332
7N2C|1|16|U|333

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain ST

30S ribosomal protein S20