HL_7N2C_029

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2C_029 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1181

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7N2C|1|16|C|1314
7N2C|1|16|U|1315
7N2C|1|16|G|1316
7N2C|1|16|C|1317
7N2C|1|16|A|1318
7N2C|1|16|A|1319
7N2C|1|16|C|1320
7N2C|1|16|U|1321
7N2C|1|16|C|1322
7N2C|1|16|G|1323

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SM

30S ribosomal protein S13

Chain SN

30S ribosomal protein S14

Chain SS

30S ribosomal protein S19