HL_7N2C_068

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7N2C|1|23|A|1453, 7N2C|1|23|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2C_068 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0762

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7N2C|1|23|C|1451
7N2C|1|23|G|1452
7N2C|1|23|A|1453
7N2C|1|23|C|1454
7N2C|1|23|G|1455
7N2C|1|23|G|1456
7N2C|1|23|U|1457
7N2C|1|23|U|1458
7N2C|1|23|G|1459

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LQ

50S ribosomal protein L17