HL_7N2C_093

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7N2C|1|23|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2C_093 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.083

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7N2C|1|23|U|2528
7N2C|1|23|G|2529
7N2C|1|23|A|2530
7N2C|1|23|A|2531
7N2C|1|23|G|2532
7N2C|1|23|U|2533
7N2C|1|23|A|2534
7N2C|1|23|G|2535

Current chains

Chain 23

23S rRNA

Nearby chains

Chain EF

Elongation factor G

Chain LF

50S ribosomal protein L6

Chain Lj

50S ribosomal protein L36