HL_7N8B_083

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

7N8B|1|B5|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_083 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1136

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7N8B|1|B5|G|243
7N8B|1|B5|A|244
7N8B|1|B5|U|245
7N8B|1|B5|G|246
7N8B|1|B5|A|247
7N8B|1|B5|U|248
7N8B|1|B5|U|249
7N8B|1|B5|C|250

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A