HL_7N8B_085

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7N8B|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_085 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.0915

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7N8B|1|B5|G|330
7N8B|1|B5|A|331
7N8B|1|B5|U|332
7N8B|1|B5|A|333
7N8B|1|B5|G|334
7N8B|1|B5|U|335
7N8B|1|B5|G|336
7N8B|1|B5|G|337
7N8B|1|B5|C|338

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A