HL_7N8B_122

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7N8B|1|B5|G|834, 7N8B|1|B5|U|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_122 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.389

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7N8B|1|B5|A|829
7N8B|1|B5|U|830
7N8B|1|B5|U|831
7N8B|1|B5|U|832
7N8B|1|B5|U|833
7N8B|1|B5|G|834
7N8B|1|B5|U|835
7N8B|1|B5|U|836
7N8B|1|B5|G|837
7N8B|1|B5|G|838
7N8B|1|B5|U|839
7N8B|1|B5|U|840
7N8B|1|B5|U|841
7N8B|1|B5|C|842
7N8B|1|B5|U|843

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BL

40S ribosomal protein S11-A