HL_7NAC_023

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7NAC|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1781

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NAC|1|1|C|958
7NAC|1|1|C|959
7NAC|1|1|U|960
7NAC|1|1|C|961
7NAC|1|1|A|962
7NAC|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 7

60S ribosomal subunit assembly/export protein LOC1

Chain J

rRNA-processing protein EBP2

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase