HL_7NAC_041

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7NAC|1|1|A|1864, 7NAC|1|1|A|1865, 7NAC|1|1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_041 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3779

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7NAC|1|1|U|1862
7NAC|1|1|G|1863
7NAC|1|1|A|1864
7NAC|1|1|A|1865
7NAC|1|1|C|1866
7NAC|1|1|A|1867
7NAC|1|1|G|1868

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 8

NOC2 isoform 1

Chain R

60S ribosomal protein L19-A