HL_7NBU_040

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_040 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1484

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NBU|1|a|U|158
7NBU|1|a|G|159
7NBU|1|a|A|160
7NBU|1|a|A|161
7NBU|1|a|U|162
7NBU|1|a|C|163
7NBU|1|a|C|164
7NBU|1|a|A|165
7NBU|1|a|U|166
7NBU|1|a|A|167
7NBU|1|a|G|168

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L28