HL_7NFX_026

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7NFX|1|5|U|1596, 7NFX|1|5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_026 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1189

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7NFX|1|5|A|1593
7NFX|1|5|C|1594
7NFX|1|5|G|1595
7NFX|1|5|U|1596
7NFX|1|5|G|1597
7NFX|1|5|C|1598
7NFX|1|5|A|1599
7NFX|1|5|A|1600
7NFX|1|5|A|1601
7NFX|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

Ribosomal protein L37