HL_7NFX_054

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7NFX|1|5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_054 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1951

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NFX|1|5|G|3757
7NFX|1|5|U|3758
7NFX|1|5|A|3759
7NFX|1|5|A|3760
7NFX|1|5|C|3761
7NFX|1|5|U|3762
7NFX|1|5|A|3763
7NFX|1|5|U|3764
7NFX|1|5|G|3765
7NFX|1|5|A|3766
7NFX|1|5|C|3767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains